Universität Stuttgart
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Item Open Access Redox-acid/base phase diagrams as an entry to computational redox chemistry(2024) Becker, Patrick M.; Heinze, Katja; Sarkar, Biprajit; Kästner, JohannesThe rapid depletion of fossil fuels and the change from conventional energy supply to so‐called sustainable and renewable energy sources have led to a renaissance of electrochemical, photochemical, and photoelectrochemical methods for chemical synthesis. While drastic experimental improvements have been realized in recent years, systematic computational studies of these types of reactions are, however, rather limited caused by a lack of suitable representations. Herein we present a generalized method to investigate and analyze a chemical system with respect to its redox‐ and acid/base‐properties based on Gibbs free‐energy differences. We represent the results in a clear manner by means of redox-acid/base phase diagrams. Motivated by computational needs, the presented method is a direct link between experimentally measurable values and Gibbs free‐energy profiles, connecting experiment and simulation. Thus, it serves as an entry to systematic computational studies of reactions, which involve a combination of electron transfers and acid/base‐chemical reaction steps, because it enables the representation of both thermodynamic and kinetic properties. The presented method is applied to four exemplary systems: Phenol, dicobaltocenium amine as a proton‐coupled electron transfer (PCET) reactant, and two porphyrin Ni II catalysts for the electrocatalytic hydrogen evolution reaction (HER).Item Open Access Specific DNMT3C flanking sequence preferences facilitate methylation of young murine retrotransposons(2024) Dossmann, Leonie; Emperle, Max; Dukatz, Michael; de Mendoza, Alex; Bashtrykov, Pavel; Jeltsch, AlbertThe DNA methyltransferase DNMT3C appeared as a duplication of the DNMT3B gene in muroids and is required for silencing of young retrotransposons in the male germline. Using specialized assay systems, we investigate the flanking sequence preferences of DNMT3C and observe characteristic preferences for cytosine at the -2 and -1 flank that are unique among DNMT3 enzymes. We identify two amino acids in the catalytic domain of DNMT3C (C543 and V547) that are responsible for the DNMT3C-specific flanking sequence preferences and evolutionary conserved in muroids. Reanalysis of published data shows that DNMT3C flanking preferences are consistent with genome-wide methylation patterns in mouse ES cells only expressing DNMT3C. Strikingly, we show that CpG sites with the preferred flanking sequences of DNMT3C are enriched in murine retrotransposons that were previously identified as DNMT3C targets. Finally, we demonstrate experimentally that DNMT3C has elevated methylation activity on substrates derived from these biological targets. Our data show that DNMT3C flanking sequence preferences match the sequences of young murine retrotransposons which facilitates their methylation. By this, our data provide mechanistic insights into the molecular co-evolution of repeat elements and (epi)genetic defense systems dedicated to maintain genomic stability in mammals.Item Open Access Understanding the temperature-induced decomposition of commercial nickel-cobalt-aluminum oxide (LiNi0.8Co0.15Al0.05O2) electrodes(2025) Hölderle, Tobias; Baran, Volodymyr; Schökel, Alexander; Westphal, Lea; Stelzer, Robert U.; Niewa, Rainer; Müller‐Buschbaum, Peter; Senyshyn, AnatoliyThis study addresses the thermal degradation and structural stability of the NCA (nickel-cobalt-aluminum oxide) cathode materials under varying states of charge (SOC)/delithiation and temperature. Using simultaneous thermogravimetric and differential thermal analysis and high‐resolution X‐ray diffraction, the sequential evolution from a layered NaCrS2‐type structure to spinel phases (M3O4‐type and LiM2O4‐type) and finally to a rock salt phase is characterized. Degradation involves cation migration, oxygen release, and lattice instabilities, influenced by SOC/lithium content. Fully lithiated NCA (SOC 0%) exhibits superior thermal stability with a single‐step transition, whereas partially delithiated NCA exhibits a multistep transformation process involving spinel intermediates. These findings highlight the complex interplay between energy density and thermal safety, offering guidance for designing NCA cathodes with optimized performance, safety, and stability for high‐energy lithium‐ion batteries.Item Open Access The impact of donor‐orientation on the emission properties of chlorinated trityl radicals(2025) Arnold, Mona E.; Toews, Robert; Schneider, Lars; Schmid, Jonas; Putra, Miftahussurur Hamidi; Busch, Michael; Groß, Axel; Deschler, Felix; Köhn, Andreas; Kuehne, Alexander J. C.Chlorinated trityl radicals functionalized with electron‐donating groups are promising red‐emitting materials for optoelectronic and spintronic applications, overcoming the spin‐statistical limit of conventional emitters. Donor functionalization induces charge transfer character, enhancing photoluminescence quantum yield, which depends on the donor strength and its orientation. However, donor‐functionalized tris(trichlorophenyl)methyl radicals often show lower quantum yield than their perchlorinated derivatives, likely due to weaker donor‐acceptor electronic coupling and enhanced non‐radiative decay. A novel trityl derivative is presented with two additional chlorines that restrict the orientation of the donor to a nearly perpendicular arrangement toward the trityl plane, minimizing vibronic coupling and non‐radiative losses. Spectroscopic and computational studies reveal that this steric constraint improves the photoluminescence quantum yield compared to the tris(trichlorophenyl)methyl analogs. These findings highlight the potential of donor‐acceptor decoupling to enable efficient, redshifted emission, offering a design strategy for high‐performance radical emitters.Item Open Access The role of spacer length in macrocyclization reactions under confinement(2024) Nandeshwar, Muneshwar; Weisser, Kilian; Ziegler, Felix; Frey, Wolfgang; Buchmeiser, Michael R.We studied the influence of the distance of olefin metathesis catalysts from the inner surface of a mesoporous support on macrocyclization and Z‐selectivity under confinement. For these purposes, the cationic molybdenum imido alkylidene N‐heterocyclic carbene (NHC) catalysts [Mo(N‐(2‐tBu‐C6H4)(1‐mesityl‐3‐(3‐trimethoxysilylprop‐1‐yl)‐imidazol‐2‐ylidene)(CHCMe2Ph)(MeCN)Br+ B(ArF)4-] Mo2, [Mo(N‐(2‐tBu‐C6H4)(1‐mesityl‐3‐(3‐trimethoxysilylprop‐1‐yl)‐imidazol‐2‐ylidene)(CHCMe2Ph)(MeCN)OTf+ B(ArF)4-] Mo3, [Mo(N‐(2,6‐Me2‐C6H3)(1‐mesityl‐3‐(3‐trimethoxysilylprop‐1‐yl)‐imidazol‐2‐ylidene)(CHCMe2Ph)(MeCN)Br+ B(ArF)4-] Mo5, and [Mo(N‐(2,6‐iPr2‐C6H3)(1‐mesityl‐3‐(3‐trimethoxysilylprop‐1‐yl)‐imidazol‐2‐ylidene)(CHCMe2Ph)(MeCN)+Br B(ArF)4-] Mo7 (B(ArF)4 = tetrakis[3,5‐bis(trifluoromethyl)phenyl]borate), all containing a trimethoxysilylpropyl tether, were selectively immobilized inside the mesopores of SBA‐15. Under confinement, both macro(mono)cyclization (MMC) and Z‐selectivity were higher than in solution but lower than with catalysts directly bound to the surface of the mesoporous supports. These findings are in agreement with existing theoretical models on substrate and product distribution in mesopores, which suggest that the highest substrate concentration is found at the pore wall and that it increases with decreasing pore diameter.Item Open Access Structural characterization of surface immobilized platinum hydrides by sensitivity-enhanced 195Pt solid state NMR spectroscopy and DFT calculations(2024) Atterberry, Benjamin A.; Wimmer, Erik J.; Klostermann, Sina; Frey, Wolfgang; Kästner, Johannes; Estes, Deven P.; Rossini, Aaron J.Supported single-site platinum hydride compounds are promising heterogeneous catalysts for organic transformations. Few methods exist to describe the structures of single-site Pt catalysts with atomic resolution because of their disordered structures and low Pt loadings. Here, we study the compounds formed when bis(tri-tert-butylphosphino)platinum, Pt(PtBu3)2, is supported on dehydroxylated SiO2 or SiO2-Al2O3. First, we obtain magic angle spinning (MAS) 1H, 31P and 195Pt ssNMR spectra of four model Pt phosphine compounds with oxidation states of 0 or +2 and coordination numbers between 2 and 4. These compounds are analogs of potential structures present in the supported compounds. MAS 195Pt ssNMR spectra were obtained using 31P{195Pt} sideband selective J-resolved and J-HMQC experiments. The measured 1H and 31P chemical shifts, 31P-195Pt J-couplings and 195Pt chemical shift (CS) tensors are shown to be diagnostic of oxidation state and coordination number. Room temperature 1H ssNMR spectra of Pt(PtBu3)2 supported on SiO2 or SiO2-Al2O3 show diagnostic hydride NMR signals, suggesting that Pt(PtBu3)2 undergoes oxidative addition, resulting in surface hydrides and Pt–oxygen bonds to the support surface. MAS dynamic nuclear polarization (DNP) enables 31P{195Pt} correlation NMR experiments on the supported compounds. These experiments enable the measurement of the 31P-195Pt J-coupling constants and 195Pt CS tensors. Combined NMR and DFT analyses suggest that the primary surface platinum species are [HPt(PtBu3)2OSi] on SiO2 and [HPt(PtBu3)2]+[Si-O--Al] on SiO2-Al2O3. The Pt-oxygen bond length is dependent on the support and estimated as 2.1-2.3 Å and 2.7-3.0 Å for SiO2 and SiO2-Al2O3, respectively.Item Open Access Two of a kind : the cerium(III) oxidomolybdates(VI) Ce2Mo3O12 and Ce4Mo7O27(2025) Knies, Benjamin; Strobel, Sabine; Hartenbach, IngoAlthough primarily received as by‐products, the title compounds can be synthesized directly by the admixture of CeO2, Ce, and MoO3, with the latter used as reactant and fluxing agent in flux‐mediated solid‐state syntheses at 850 °C for 7 days. Both cerium molybdates crystallize in space group C2/c with a = 1692.12(3), b = 1184.26(3), c = 1598.66(3) pm, and β = 108.4940(10)° (Z = 12) for Ce2Mo3O12 and a = 4609.00(12), b = 747.700(10), c = 1432.71(4) pm, and β = 101.023(2)° (Z = 8) for Ce4Mo7O27. The crystal structure of Ce2Mo3O12 comprises three crystallographically distinguishable Ce3+ cations with coordination numbers of 8 in shapes of trigonal dodecahedra. The five different Mo6+ cations are situated in the centers of noncondensed [MoO4]2- tetrahedra, and the overall arrangement of the mentioned building blocks is derived from the scheelite type. In the structure of Ce4Mo7O27, four crystallographically different Ce3+ cations with coordination numbers of 8 and 9 are found, as well as five non‐condensed [MoO4]2- tetrahedra and one pyroanionic [Mo2O7]2- unit.Item Open Access Transitions in solvate crystals of a tetraaryladamantane(2023) Frey, Wolfgang; Schwenger, Alexander; Berking, Tim; Richert, ClemensObtaining high-resolution structures of liquid compounds can be difficult. Encapsulating them in the lattice of a larger organic molecule acting as crystallization chaperone is one option to overcome this difficulty. Tetraaryladamantane ethers can play the role of chaperones, accommodating a range of different guest molecules in their crystals. How well-ordered crystalline arrangements for molecules of different shape are achieved is not clear. Cases in which more than one structure is found may shed light on this phenomenon. Here, we report low-order cubic crystal structures of 1,3,5,7-tetrakis(2,4-dimethoxyphenyl)adamantane (TDA) encapsulating ortho-xylene or cyclohexane, together with better ordered structures obtained after warming the crystals to 60 °C. Evidence for cubic crystal systems was also found for limonene, hexachlorobutadiene and eucalyptol, with a transition to a triclinic system for the former two, but no transition up to 70 °C for the latter. These findings indicate that some solvate structures of TDA can readily undergo structural transitions to less solvated, better ordered systems. Crystals obtained by rapid thermal crystallization may be in kinetically trapped states, and the transition to a solvate-free crystal system appears to have a kinetic barrier that depends strongly on the structure of the liquid guest molecules encapsulated in the lattice.Item Open Access Autonomous adaption of intelligent humidity‐programmed hydrogel patches for tunable stiffness and drug release(2023) Pflumm, Stephan; Wiedemann, Yvonne; Fauser, Dominik; Safaraliyev, Javidan; Lunter, Dominique; Steeb, Holger; Ludwigs, SabineIntelligent humidity‐programmed hydrogel patches with high stretchability and tunable water‐uptake and ‐release are prepared by copolymerization and crosslinking of N‐isopropylacrylamide and oligo(ethylene glycol) comonomers. These intelligent elastomeric patches strongly respond to different humidities and temperatures in terms of mechanical properties which makes them applicable for soft robotics and smart skin applications where autonomous adaption to environmental conditions is a key requirement. It is shown that beyond using the hydrogel in the conventional state in aqueous media, new patches can be controlled by relative humidity. This humidity programming of the patches allows to tune drug release kinetics, opening potential application fields such as skin wound therapy and personalized medication. In situ dynamic‐mechanical measurements show a huge dependence on temperature and humidity. The glass transition temperature Tg shifts from around 60 °C at dry conditions to below 0 °C for 75% r.h. and higher. The storage modulus is tunable over more than four orders of magnitude from 0.6 up to 400 MPa. Time‐temperature superposition in master curves allows to extract relaxation times over 14 orders of magnitude. With strains at break of over 200% the patches are compliant with human skin and therefore patient‐friendly in terms of adapting to movements.Item Open Access Refined read‐out : the hUHRF1 Tandem‐Tudor domain prefers binding to histone H3 tails containing K4me1 in the context of H3K9me2/3(2023) Choudalakis, Michel; Kungulovski, Goran; Mauser, Rebekka; Bashtrykov, Pavel; Jeltsch, AlbertUHRF1 is an essential chromatin protein required for DNA methylation maintenance, mammalian development, and gene regulation. We investigated the Tandem-Tudor domain (TTD) of human UHRF1 that is known to bind H3K9me2/3 histones and is a major driver of UHRF1 localization in cells. We verified binding to H3K9me2/3 but unexpectedly discovered stronger binding to H3 peptides and mononucleosomes containing K9me2/3 with additional K4me1. We investigated the combined binding of TTD to H3K4me1-K9me2/3 versus H3K9me2/3 alone, engineered mutants with specific and differential changes of binding, and discovered a novel read-out mechanism for H3K4me1 in an H3K9me2/3 context that is based on the interaction of R207 with the H3K4me1 methyl group and on counting the H-bond capacity of H3K4. Individual TTD mutants showed up to a 10,000-fold preference for the double-modified peptides, suggesting that after a conformational change, WT TTD could exhibit similar effects. The frequent appearance of H3K4me1-K9me2 regions in human chromatin demonstrated in our TTD chromatin pull-down and ChIP-western blot data suggests that it has specific biological roles. Chromatin pull-down of TTD from HepG2 cells and full-length murine UHRF1 ChIP-seq data correlate with H3K4me1 profiles indicating that the H3K4me1-K9me2/3 interaction of TTD influences chromatin binding of full-length UHRF1. We demonstrate the H3K4me1-K9me2/3 specific binding of UHRF1-TTD to enhancers and promoters of cell-type-specific genes at the flanks of cell-type-specific transcription factor binding sites, and provided evidence supporting an H3K4me1-K9me2/3 dependent and TTD mediated downregulation of these genes by UHRF1. All these findings illustrate the important physiological function of UHRF1-TTD binding to H3K4me1-K9me2/3 double marks in a cellular context.