Universität Stuttgart
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Item Open Access The role of parvalbumin, sarcoplasmatic reticulum calcium pump rate, rates of cross-bridge dynamics, and ryanodine receptor calcium current on peripheral muscle fatigue: a simulation study(2016) Röhrle, Oliver; Neumann, Verena; Heidlauf, ThomasItem Open Access Comparative sensitivity analysis of muscle activation dynamics(2015) Rockenfeller, Robert; Günther, Michael; Schmitt, Syn; Götz, ThomasWe mathematically compared two models of mammalian striated muscle activation dynamics proposed by Hatze and Zajac. Both models are representative for a broad variety of biomechanical models formulated as ordinary differential equations (ODEs). These models incorporate parameters that directly represent known physiological properties. Other parameters have been introduced to reproduce empirical observations. We used sensitivity analysis to investigate the influence of model parameters on the ODE solutions. In addition, we expanded an existing approach to treating initial conditions as parameters and to calculating second- order sensitivities. Furthermore, we used a global sensitivity analysis approach to include finite ranges of parameter values. Hence, a theoretician striving for model reduction could use the method for identifying particularly low sensitivities to detect superfluous parameters. An experimenter could use it for identifying particularly high sensitivities to improve parameter estimation. Hatze’s nonlinear model incorporates some parameters to which activation dynamics is clearly more sensitive than to any parameter in Zajac’s linear model. Other than Zajac’s model, Hatze’s model can, however, reproduce measured shifts in optimal muscle length with varied muscle activity. Accordingly we extracted a specific parameter set for Hatze’s model that combines best with a particular muscle force-length relation.Item Open Access Symplectic model order reduction with non-orthonormal bases(2019) Buchfink, Patrick; Bhatt, Ashish; Haasdonk, BernardParametric high-fidelity simulations are of interest for a wide range of applications. But the restriction of computational resources renders such models to be inapplicable in a real-time context or in multi-query scenarios. Model order reduction (MOR) is used to tackle this issue. Recently, MOR is extended to preserve specific structures of the model throughout the reduction, e.g. structure-preserving MOR for Hamiltonian systems. This is referred to as symplectic MOR. It is based on the classical projection-based MOR and uses a symplectic reduced order basis (ROB). Such a ROB can be derived in a data-driven manner with the Proper Symplectic Decomposition (PSD) in the form of a minimization problem. Due to the strong nonlinearity of the minimization problem, it is unclear how to efficiently find a global optimum. In our paper, we show that current solution procedures almost exclusively yield suboptimal solutions by restricting to orthonormal ROBs. As new methodological contribution, we propose a new method which eliminates this restriction by generating non-orthonormal ROBs. In the numerical experiments, we examine the different techniques for a classical linear elasticity problem and observe that the non-orthonormal technique proposed in this paper shows superior results with respect to the error introduced by the reduction.Item Open Access Coupling DuMuX and DUNE-PDELab to investigate evaporation at the interface between Darcy and Navier-Stokes flow(Stuttgart : SimTech - Cluster of Excellence, 2017) Grüninger, Christoph; Fetzer, Thomas; Flemisch, Bernd; Helmig, RainerAn implementation of a coupled Navier-Stokes/Darcy model based on different Dune discretization modules is presented. The Darcy model is taken from DuMuX, the Navier-Stokes model is implemented on top of Dune-PDELab, and the coupling is done with help of Dune-MultiDomain together with some project-specific auxiliary code. The Navier-Stokes model features one fluid phase, the Darcy model two fluid phases. Each fluid phase may be composed of two components, in addition, non-isothermal processes are considered. The coupling between free and porous-medium flow uses a sharp interface between both subdomains and conserves mass, momentum, and energy by accounting for the corresponding fluxes across the interface. A cell-centered finite volume method (FVM) is combined with a marker and cell (MAC) scheme. It solves the coupled problem in one monolithic system using a Newton method and a direct linear solver. Numerical results demonstrate the basic functioning and a lab-scale reference application.Item Open Access Efficient wildland fire simulation via nonlinear model order reduction(2021) Black, Felix; Schulze, Philipp; Unger, BenjaminWe propose a new hyper-reduction method for a recently introduced nonlinear model reduction framework based on dynamically transformed basis functions and especially well-suited for transport-dominated systems. Furthermore, we discuss applying this new method to a wildland fire model whose dynamics feature traveling combustion waves and local ignition and is thus challenging for classical model reduction schemes based on linear subspaces. The new hyper-reduction framework allows us to construct parameter-dependent reduced-order models (ROMs) with efficient offline/online decomposition. The numerical experiments demonstrate that the ROMs obtained by the novel method outperform those obtained by a classical approach using the proper orthogonal decomposition and the discrete empirical interpolation method in terms of run time and accuracy.